Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFGFGNKDIGIDLGTANTLV-YMKGKGIVLRE--------PSVVAMKKDTQEIVAVGSDAKNMIGRTPGNI--------------------VAIRPMK-------DGVI-------ADYDTTAAMMKYYIQKAGKSVNASKPRVMICVPSGITGVEKRAVIDATRQAGAKDAFTIEEPFAAAIGAGLPVGEPTGSMVV-DIGGGTTEVAVISLGGI---------VTSRSVRTAGDDLDEVIINYIRKKYNLLIG-------------DRTAEAIKMEIGSASPKGLDLSPFSIRGRDLVTGLPK--TIEITPEEISEALADTVAAIIDAVKGTLENTPPELSADIMDKGIVLTGGGALLRNLDTVISEETKMPVIIADEPLDCVAIGTGKALENMDMYKRKKMN |
| 4JN4 Chain:A ((5-349)) | --------IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLV--GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADA----TG-PKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVS-DIDD--VILVGG-------------QTRMPMV----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -83678 for 2038 contacts (-41.1/contact) +
2D Compatibility (PS) -30137 + (NN) -14214 + (LL) 3844
1D Compatibility (HY) -14800 + (ID) 4550
Total energy: -143535.0 ( -70.43 by residue)
QMean score : 0.377
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