Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQALQT----GGLCPINWQPGEKTIV
1QMV Chain:A ((8-183))
-----IGKPAPDFKATAVV-DGAFKEVKLSDY--KGKYVVLFFYPLDFTFV-PTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTI-
General information:
TITO was launched using:
RESULT:
Template:
1QMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111207 for 1294 contacts (-85.9/contact) +
2D Compatibility (PS) -18470 + (NN) -6965 + (LL) 1132
1D Compatibility (HY) -17600 + (ID) 4250
Total energy: -157360.0 ( -121.61 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1QMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QMV-query.scw
PDB file :
Tito_Scwrl_1QMV.pdb
: