Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAEKEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILN--KLAMSKVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEH-VEKFAHVCDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIKN
1GEQ Chain:A ((3-243))
------------KDGSLIPYLTAGDPDKQSTLNFLLALDEYA-GAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY-------EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIG-EKGREATEFLKKKVE-----
General information:
TITO was launched using:
RESULT:
Template:
1GEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186789 for 1913 contacts (-97.6/contact) +
2D Compatibility (PS) -26037 + (NN) -19915 + (LL) 1876
1D Compatibility (HY) -14000 + (ID) 3950
Total energy: -248815.0 ( -130.07 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_1GEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEQ-query.scw
PDB file :
Tito_Scwrl_1GEQ.pdb
: