Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMITLKSRREIDEMKAAGKILADTHKELKKIIKPGITSWDLEVFTEEFL-RKNGATPEQKGFEGYEYAICASINDEICHGFPRKQKL-NQGDIITVDMVVNYHGALADSAWTYAVGEVPDDVKHLMDVTHKALYLGIEQAQVGARVGDIGHAIQTYVESENLAVVREFIGHGVGPTLHEKPDIPHYGTAGKGPRLKEGMVITVEPMVNMGAWKAKMDDNGWTARTVDGSLSAQYEHTFAITKDGPEILTYQGEND
1YVM Chain:A ((3-254))-ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDD-


General information:
TITO was launched using:
RESULT:

Template: 1YVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104732 for 2184 contacts (-48.0/contact) +
2D Compatibility (PS) -26779 + (NN) -7899 + (LL) 132
1D Compatibility (HY) -19200 + (ID) 4600
Total energy: -163078.0 ( -74.67 by residue)
QMean score : 0.532

(partial model without unconserved sides chains):
PDB file : Tito_1YVM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YVM-query.scw
PDB file : Tito_Scwrl_1YVM.pdb: