Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNENLITITGLTKKYRKRK--PLNDINLSLQKGKIIGLLGPNGAGKTTLLNAISGLLKPTSGTIN-----LAENSKIAYLPSEDFLPNMVICDYFRIYHSF-------FPDFDQEKAKQMIRSFGINIKENTKY-------------LSKGNAAKVMLALILCRDVDLYLLDEPFSEIDLISRDD---LIKSIATFLKEDATLVVTTHLIQDMEMMFDEIIFLKRGKIIEQIDTETLREEYRKSVMDYYREVFGHA
1OXX Chain:K ((4-228))
-----IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL-IVPPEDRKIGMVFQTW-ALYPNLTAFENIAFPLTNMKMSKEEIRK---RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124754 for 1449 contacts (-86.1/contact) +
2D Compatibility (PS) -20550 + (NN) -5057 + (LL) 2524
1D Compatibility (HY) -14800 + (ID) 3500
Total energy: -166137.0 ( -114.66 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1OXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXX-query.scw
PDB file :
Tito_Scwrl_1OXX.pdb
: