Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQWTVKEMAAYVGISADTLRYYEKNKIIVP-NRLENGYRVYNTEHLLELKFILVMKYARFSLSEIKLMMEWLRSEPSVACNTASKELLALKAAEI-KQTIAHYTKIAALLEELPQID-EVQDYSTVQKDVNTFVEHIFTDIRKDGF
3GP4 Chain:A ((4-116))
----NIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAE---DLRWILFTRQMRRAGLSIEALIDYL------ALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT---------------------
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39489 for 644 contacts (-61.3/contact) +
2D Compatibility (PS) -12422 + (NN) -10250 + (LL) 2684
1D Compatibility (HY) -5600 + (ID) 1800
Total energy: -66877.0 ( -103.85 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: