Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQGKNILLAVSGGIAVYKAVALTSKLTQAGANVKVMMTAHAQEFVPPLSFQVLSKNDVYTDTFDEKKSSVVAHIDLADWADLVIVAPATANVIGKMANGIADDMVTTTILATEAPVWVAPAMNVHMIQHPAVIRNINRLYADGVRFIEPEEGYLACGYVGRGRLEEPEKIVLRIAEFFQEDKNLLQGKNVLVTAGATREKLDPVRYFTNHSTGKMGFSIAESAARHGANVTLITTSKAL-PVPHGVEAIY-VESAEEMHQAVNERKVSQDIFVMTAAVADYTPA--------------------QVSDQKIKKQPGDFTIAMKRTKDILLEIGQHKTSEQVVIGFAAETENVEAN----ARKKLTSKNADMIVANNISEAGAGFSGDTNIVTFYRKDGSSEALPILDKKEVAEHIIKEAANFLRK |
| 2GK4 Chain:A ((6-226)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKEWNPTIH-LIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQ----ISADQHRAIFVEKN---QLQTVQTKEEIAELLLEK------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -61901 for 1465 contacts (-42.3/contact) +
2D Compatibility (PS) -20680 + (NN) -5981 + (LL) 15516
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -87096.0 ( -59.45 by residue)
QMean score : 0.471
|
|
|