Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIRF--EPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
1KDT Chain:A ((8-224))
------ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG-EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKL--
General information:
TITO was launched using:
RESULT:
Template:
1KDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131806 for 1758 contacts (-75.0/contact) +
2D Compatibility (PS) -23451 + (NN) -11643 + (LL) 460
1D Compatibility (HY) -13200 + (ID) 4650
Total energy: -184290.0 ( -104.83 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_1KDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDT-query.scw
PDB file :
Tito_Scwrl_1KDT.pdb
: