Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFLKVWSVLTIICMTVVVFGGAL----VTKTGSA------DGCGNSWPLCNGQLVRLT-DVTPEKL--IEF-MHRMTTGIS------------SIFVIVLAI---------CAWIYMKNRRETKPLAIIAVLFLIIQALMGMAAVVWGQ-----NPYIMALHFGISI----ICYASIVLLALMIFEVDRK----FDARN-LVMGTKLRVNIYALTIYTYLAVYTG-ALVRH-------EKASMAVPVWPFE------------------NGHFIM-------PTSVQDYVQYFHRLAAFILIVWLLYVTWLVFRD---------Y----RRYRVLTFSMVLSLVFIALQAVTGALSVYTGV---NLYIALAHSLIITMLFA-LLCYLCLLASRSKSNRLRIK |
| 4R7F Chain:A ((2-398)) | QVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNE-DTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQQVSFNINNKNFPITYPQTD-LKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVENISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEKSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R7F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -301590 for 2053 contacts (-146.9/contact) +
2D Compatibility (PS) -30734 + (NN) 16951 + (LL) 920
1D Compatibility (HY) -7600 + (ID) 3300
Total energy: -325353.0 ( -158.48 by residue)
QMean score : 0.104
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