Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYI---ANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATDETYELISEFLEEK |
| 3AIM Chain:A ((61-297)) | ---------------------------------------------------------------------------------EVGKIEDITIPGSETNIKARVYYPKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNSEKFNGKYG-IAVGGDSAGGNLAA-VTAILSKKENIKLKYQVLIYPAVSF-----DLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILA-----DLNDLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVEFNNVIHGFVS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127678 for 2059 contacts (-62.0/contact) +
2D Compatibility (PS) -25554 + (NN) -14395 + (LL) 8356
1D Compatibility (HY) -21200 + (ID) 5300
Total energy: -185771.0 ( -90.22 by residue)
QMean score : 0.577
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