Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEK------VVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY |
3VVF Chain:A ((38-256)) | ------------------------------------IRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERL-GLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGV---IVSRKGGPRTAKDLQGKVV---GVQVGTTYMEAAQKIPGIKEVRTY--QRDPDALQDLLAGRIDTWITDRFVA-----KEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -78925 for 1771 contacts (-44.6/contact) +
2D Compatibility (PS) -23078 + (NN) -6167 + (LL) 3876
1D Compatibility (HY) -14000 + (ID) 3200
Total energy: -121494.0 ( -68.60 by residue)
QMean score : 0.534
|
|
|