Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPA-FVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAP-IFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEAL----LTKEIQPTYAVTKLTDWEFN
4JDP Chain:A ((24-280))
MPDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAREKPNAKVFTTGEEGLIEELRLAGLEIVDYDEAEYLVVGSNRKINFELMTKALRACLRGIRYIATNPDRIFPAEDGPIPGTGMIIGALYWMTGREPDVVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNSLKD----
General information:
TITO was launched using:
RESULT:
Template:
4JDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148127 for 2207 contacts (-67.1/contact) +
2D Compatibility (PS) -27293 + (NN) -14192 + (LL) 312
1D Compatibility (HY) -18000 + (ID) 4250
Total energy: -211550.0 ( -95.85 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_4JDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JDP-query.scw
PDB file :
Tito_Scwrl_4JDP.pdb
: