Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAV-MGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDN--QANTICDKMATKTNTKHRVLYVPEQL---GEEAYRSLLKEPAIQEGLRLVQSANAIILGIG-----DALAMAKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVHKVPT----FGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK |
| 4L4Z Chain:A ((18-265)) | -------------------------------------------------------------------------------------------EGCLEYETQLRRQFSLQHVRVIPGLADADVGGRLGIG---AAHMLMSLLQPQQMLAIGFGEATMNTLQRL--SGFISSQQIRLVTLSGGVGSYMTGIGQLNAACS-----------VNIIPAPLRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDDATIIRSGYISQGEQLMIGRKGAVGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGYINA-LVTDQDTAAAILR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L4Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99895 for 1958 contacts (-51.0/contact) +
2D Compatibility (PS) -25779 + (NN) -16516 + (LL) 9996
1D Compatibility (HY) -16400 + (ID) 3500
Total energy: -152094.0 ( -77.68 by residue)
QMean score : 0.479
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