Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFGSAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF
3PIO Chain:L ((26-111))
---------------------------RLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSGN---KTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGG---
General information:
TITO was launched using:
RESULT:
Template:
3PIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16095 for 599 contacts (-26.9/contact) +
2D Compatibility (PS) -9482 + (NN) -5279 + (LL) 2588
1D Compatibility (HY) -4000 + (ID) 2650
Total energy: -34918.0 ( -58.29 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3PIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIO-query.scw
PDB file :
Tito_Scwrl_3PIO.pdb
: