Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMVESYHENGAYFVIAP-QIAIPHARPTDGVENSAVSLVVLKDGVNFGHAAND----PVRLVFGLAATSSEAHLKVIQKIVSLLSNNDNIEKMIHSED---YQAIGELVEG
3LF6 Chain:A ((39-155))
----------------------------LINDGMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTD-SKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDEDFMQQLLVMNDDEIYQSI------
General information:
TITO was launched using:
RESULT:
Template:
3LF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85588 for 722 contacts (-118.5/contact) +
2D Compatibility (PS) -11439 + (NN) -2592 + (LL) 2192
1D Compatibility (HY) -11200 + (ID) 1550
Total energy: -110177.0 ( -152.60 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3LF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LF6-query.scw
PDB file :
Tito_Scwrl_3LF6.pdb
: