Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNFFVRSGFIGLILLFVIQVLGIIRGLLIQSGFMDGSIDQTLLGTKLIIVPIIFFTISVIFFLLWFYKDYQKSRFPN
2RDD Chain:B ((17-25))
-------------------------------------------------------------YFMILRPQQ---------
General information:
TITO was launched using:
RESULT:
Template:
2RDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3227 for 26 contacts (-124.1/contact) +
2D Compatibility (PS) -912 + (NN) -424 + (LL) 5660
1D Compatibility (HY) -800 + (ID) 100
Total energy: 197.0 ( 7.58 by residue)
QMean score : 0.818
(partial model without unconserved sides chains):
PDB file :
Tito_2RDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDD-query.scw
PDB file :
Tito_Scwrl_2RDD.pdb
: