Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VFNIQTFNAIAKEGLKTFDLEKYVIDANQPADGILLRSYNLHDFDFPETVKAVARAGAGVNNIPVENCSEKGIVVFNTPGANANAVKELVLASLFVSARPILEGTEWVKELPAEDDVEQKVEAGKKAFAGTELAGKKLGIIGLGAIGALVANDALSLGMDVVGYDPFVSVDTAWRISKEVERAMTIEEVLATCDYLTVHVPLTDKTRGMFNADTLQLVKDNAVLLNFSRGELVDSASVKEALDDGLLR-----LYITDFATKE------LLNHKKVHVFPHLGASTEEAETNCAKMAAKELQSYLETGSIKNSVNFPNVEMPYNGHPRIGICHKNIPNMVGQITTELGKYSLNILDMINRSKNEYAYTLIDIDKETQANLEQLKQDLLAVQGVLRVRVIEPLGVTV |
2PA3 Chain:A ((74-409)) | -----------------------------------------------EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA-----KAHRGVWNKLAAGS-----FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYD----IENKLPLGNATQ-VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHVGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDV-AEKALQAMKAIPGTIRARLL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PA3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157256 for 2491 contacts (-63.1/contact) +
2D Compatibility (PS) -35185 + (NN) -8638 + (LL) 4620
1D Compatibility (HY) -21600 + (ID) 5150
Total energy: -223209.0 ( -89.61 by residue)
QMean score : 0.469
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