Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKTFSAYNFLTALILCLLTVLFIFPFYWIMTGAFKSQPDTIIIPPQWWPKAPTLENFKALTVQNPALRWLWNSVFISIMTMFLVCCTSSMAGYVLAKKRFYGQKIL------FSLFIAAMALPKQVVLVP-LVRIINFMGIHDTLWAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEIRTFINVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
4KHZ Chain:G ((80-283))
------------------------------------------------------------------PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQR-------------
General information:
TITO was launched using:
RESULT:
Template:
4KHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168183 for 1415 contacts (-118.9/contact) +
2D Compatibility (PS) -20236 + (NN) -3153 + (LL) 6236
1D Compatibility (HY) -17200 + (ID) 2850
Total energy: -205386.0 ( -145.15 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_4KHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KHZ-query.scw
PDB file :
Tito_Scwrl_4KHZ.pdb
: