Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLLVVGSGGREHAIAKKLLASKDVDQVFVAPGNDGMTLD-GLDLVNIGISEHSRLIDFAKENEIAWTFIGPDDALAAGIVDDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAAYGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETVEQAVEAAQEMLLDNKFGDSGARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQSVVDTAVETIIKPVLEGMIAEGRPYLGVLYAGLILTADG-PKVIEFNSRFGDPETQIILPRLTSDFAQNIDDIMMGIEPYIT-----WQKDGVTLGVVVASEGYPLDYEK-----GVPLPEKTDGDIITYYAGAKFAENSKALLSNGGRVYMLVTTEGSVKAGQDKIYTQLAQQ-DTTGLFYRNDIGSKAIK |
3MJF Chain:A ((5-427)) | -NILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDL---VELCLAGTQGKLNEKTSDWDER-PSLGVVLAAGGYPADYRQGDVIHGLPQQEVKDGKV--FHAGTKLNGNHE-VVTNGGRV-LCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGYRAIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MJF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228837 for 3648 contacts (-62.7/contact) +
2D Compatibility (PS) -44879 + (NN) -19287 + (LL) 712
1D Compatibility (HY) -30800 + (ID) 9950
Total energy: -333041.0 ( -91.29 by residue)
QMean score : 0.558
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