Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLS----VESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQ------------GTYDDKISLFCDGGVPDPWY--TGDFEETYRLVNDGCKQWLTLINNSRD
1XWW Chain:A ((6-153))
-KSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRAVSCLRNHGI-HTAHKARQ-ITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLI----IEDPYYGNDSDFETVYQQCVRCCRAFLEKAH----
General information:
TITO was launched using:
RESULT:
Template:
1XWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59162 for 1058 contacts (-55.9/contact) +
2D Compatibility (PS) -13890 + (NN) -3926 + (LL) -84
1D Compatibility (HY) -12000 + (ID) 2750
Total energy: -91812.0 ( -86.78 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1XWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWW-query.scw
PDB file :
Tito_Scwrl_1XWW.pdb
: