Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIKWFSLVRITGLLLVLLYHFFKNSFPGGFVGVDIFFTFSGFLITALLIDEFSKTKKIDFVSFCRRRFYRIFPPLVLMVLVTIPFVFLVKSDFRASIGSQIMTALGFTSNFYEILTGGNYESQFIPHLFVHTWSLSIEVHFYVLWGLTVWLLSKRSKDQKQLRGTLFLISMGVFGVSFLTMFVRAFFVDNFSTIYFSTLSHIFPFFLGAMVATISGIREITGRFKKNIKNLTLKHNLIMMGSAFAGLMILTFALDFDNRLTYLFGFVLSSIFASVMIYNARILHEHTPDISEPFVITYLADISYGMYLFHWPFYIIFSRLSPNWIAVILTVVLSAVFSTLSFYIIEPFILGRKPKFLDYEFDLLPYKKWLFSIGGVLTLITVVTMLTAPSIGSFETELLQNSLQQARTNTNRTHTLAAGDAGALSDVTVIGDSVALRSSAA-----F----NKLL-----PEVQL--DAAVSRNFSKSFDIFENRIQNKALSKIVVLAVGVNSLDN--------YKTDLSQFIKSLPKGHRLIIVTPYNAKN-------MSQVTTVRDYELSLMKKYNYITVADWYKVATEH---PEIWGNTDGVHYSDSDTTGADLYVSNVKKAIQKSAQRAAK |
| 1YZF Chain:A ((2-194)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVL-IEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIG-SEKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAA-HNLPVIDLYKAMTVYPGTDEF-LQADGLHFSQ-V--GYELLGALIVREIKGRLKPKQA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YZF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79736 for 1258 contacts (-63.4/contact) +
2D Compatibility (PS) -16714 + (NN) -4718 + (LL) 35656
1D Compatibility (HY) -9200 + (ID) 1400
Total energy: -76112.0 ( -60.50 by residue)
QMean score : 0.536
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