Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEITSAKAMARTVRVSPRKTRLVLDLIRGKNVADAIAILKFTPNKAARVIEKTLNSAIANAENNFGLEKANLVVSETFANEGPTMKRFRPRAKGSASPINKRTTHVTVVVSEK
5AKA Chain:S ((5-110))
--------AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR
General information:
TITO was launched using:
RESULT:
Template:
5AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33990 for 740 contacts (-45.9/contact) +
2D Compatibility (PS) -11098 + (NN) 248 + (LL) 892
1D Compatibility (HY) -6400 + (ID) 2900
Total energy: -53248.0 ( -71.96 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_5AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AKA-query.scw
PDB file :
Tito_Scwrl_5AKA.pdb
: