Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTVYFDGNFWLGLIEYDDDGDYKVFRYFFGKEPKDDDVFNFINHKLNDLIKKYEFVKTDISLKRTNEHKKSPKRMQREINREKRKPVVSTKAQLAMKTIHMSIKNERQLSQKCKKNELRKHRYQLKQEKRYQKKKGH
3BIY Chain:A ((216-231))
----PYFEGDFWPNVLEESIKESQKLYATMEKHKEVFFVIRLIAGPAANSLPPIVDPDPLIPCDLMDGRDAFLTLARDRHLEFSSLRRAQWSTGCMLVELHTQSQD---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3BIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3396 for 58 contacts (-58.6/contact) +
2D Compatibility (PS) -1794 + (NN) -1246 + (LL) 1908
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -6028.0 ( -103.93 by residue)
QMean score : -0.217
(partial model without unconserved sides chains):
PDB file :
Tito_3BIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BIY-query.scw
PDB file :
Tito_Scwrl_3BIY.pdb
: