Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRKSMTTTFKIIRGYYLTGVGQEPSAYYFKIRD-------DFPEFETLKSGDVALTFYQNGEAITSLPALIRIDGVIEAEKQVLEFLQSEKKDHLPMLPLVALY--EQFDPLQFNTVMEVF--DNLKAEIKRLAKVNYVQGDLFDFMQEGEG
1YB3 Chain:A ((39-139))
-------FTVEEVSEVF--------NAYLY-IDGKWEEMKYPHPAFAVKPGGEVGATPQGFY-FVFAFPK----EEL--SKEFIEDVIRAFEK--------LFIYGAENFLEDFYNFEH-PISGDEVWDRIVNSDEEMINFEVDLGFDKEEVK
General information:
TITO was launched using:
RESULT:
Template:
1YB3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25653 for 502 contacts (-51.1/contact) +
2D Compatibility (PS) -9531 + (NN) -3607 + (LL) 2552
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -42289.0 ( -84.24 by residue)
QMean score : 0.115
(partial model without unconserved sides chains):
PDB file :
Tito_1YB3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YB3-query.scw
PDB file :
Tito_Scwrl_1YB3.pdb
: