Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYIEKIEANKVLDLKQIVPIEEEQMLSKTLVQRKDLGMTVFSLDKGQEIGRHSSPGDAMVNILSGLAQITIDQDKFDVAAGECIVMPANIPHSL--YAKEAFQMLLVVVKPEV
4MV2 Chain:A ((49-110))
---------------------------------------------------RHSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIWWDKES
General information:
TITO was launched using:
RESULT:
Template:
4MV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37016 for 339 contacts (-109.2/contact) +
2D Compatibility (PS) -6532 + (NN) 1026 + (LL) 4480
1D Compatibility (HY) -6000 + (ID) 800
Total energy: -44842.0 ( -132.28 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_4MV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MV2-query.scw
PDB file :
Tito_Scwrl_4MV2.pdb
: