Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAAD-FEDADIAIVATYTYGDG--DLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
1J8Q Chain:A ((1-126))
-AKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
1J8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71179 for 999 contacts (-71.3/contact) +
2D Compatibility (PS) -13436 + (NN) -5690 + (LL) 528
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -98377.0 ( -98.48 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1J8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J8Q-query.scw
PDB file :
Tito_Scwrl_1J8Q.pdb
: