Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFELKNIAYRYKGNDNKTLENINYSFQSGVFYTILGNSDSGKTTLLSLMAGLDSPTEGQVLFNKKDIKEAG--YAQHRKKNIALVFQNYNLLDYLT-------PLENVQLVKPTADKQL-----LLDLGLKEDMLTRNILRLSGGQQQRVAIARALVAGTPAILLDEPTGNLDFDIARDITMRLKDFAHKEKRCVIMVTH-SREIAHMADTALQLTGDNLKELSKESIAQSILQQRNL
1OXS Chain:C ((6-224))
---VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI---HHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV
General information:
TITO was launched using:
RESULT:
Template:
1OXS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108836 for 1543 contacts (-70.5/contact) +
2D Compatibility (PS) -21899 + (NN) -5492 + (LL) 512
1D Compatibility (HY) -18400 + (ID) 3500
Total energy: -157615.0 ( -102.15 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1OXS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXS-query.scw
PDB file :
Tito_Scwrl_1OXS.pdb
: