Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILSNFPD-------QKITMIEHDSYYKDQSHLTFEERVKT-----NYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
2JEO Chain:A ((22-232))
---RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKV---LTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-R---DLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
General information:
TITO was launched using:
RESULT:
Template:
2JEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83654 for 1506 contacts (-55.5/contact) +
2D Compatibility (PS) -21447 + (NN) -10153 + (LL) 736
1D Compatibility (HY) -23200 + (ID) 4400
Total energy: -142118.0 ( -94.37 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_2JEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JEO-query.scw
PDB file :
Tito_Scwrl_2JEO.pdb
: