Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
2C4N Chain:A ((1-246))
MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLR-RQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTH---GRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI--
General information:
TITO was launched using:
RESULT:
Template:
2C4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153425 for 2179 contacts (-70.4/contact) +
2D Compatibility (PS) -27150 + (NN) -18914 + (LL) 248
1D Compatibility (HY) -23600 + (ID) 4100
Total energy: -226941.0 ( -104.15 by residue)
QMean score : 0.732
(partial model without unconserved sides chains):
PDB file :
Tito_2C4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C4N-query.scw
PDB file :
Tito_Scwrl_2C4N.pdb
: