Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQMNFTDRATRVAIIANGKYQSKRVASKLFAAFKHDPDFYLSKKDPDIVISIGGDGMLLSAFHMYEKQLDKVRFVGVHTGHLGFYTDYRDFEVDTLINNLKNDEGEQISYPILKVTITLEDGRV-IRARALNESTIKRIEKTMVADVVINQVVFERFRGDGILVSTPTGSTAYNKSLGGAVLHPTIEALQLTEISSLNNRVYRTLGSSVIIPKKDAIEIVPKRVGVYTISIDNKTVHYKNVTKIEYSIDEKSINFVSTPSHTSFWERVNDAFIGEPEH
3V80 Chain:A ((2-264))
-----------KYMITSKGDEKSDLLRLNMIAGFG-EYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLA---YQKVSYPLLKTTVKYG---KEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSF-PFWRRVHDSFIED---
General information:
TITO was launched using:
RESULT:
Template:
3V80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154076 for 2073 contacts (-74.3/contact) +
2D Compatibility (PS) -27864 + (NN) -10832 + (LL) 816
1D Compatibility (HY) -24800 + (ID) 6050
Total energy: -222806.0 ( -107.48 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3V80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V80-query.scw
PDB file :
Tito_Scwrl_3V80.pdb
: