Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKVRIYHNPNCGTSRNVLAIIRHCGIEPEIIYYLKTPPSRMELVELLLEM-KLSARELLRTDVPAYEKFNLESSSVTDEEMIDAMIQDPILINRPIVVTSKGAKLCRPCEEILTILPVKMEKDFVKEDGQIIQSL
3GFK Chain:A ((2-118))
---VTLYTSPSCTSCRKARAWLEEHEI-PFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLYRLINEHPGLLRRPIIIDEKRLQVGYNEDEIRRFLPRKV---------------
General information:
TITO was launched using:
RESULT:
Template:
3GFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84717 for 786 contacts (-107.8/contact) +
2D Compatibility (PS) -12473 + (NN) -5092 + (LL) 1612
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -108820.0 ( -138.45 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3GFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFK-query.scw
PDB file :
Tito_Scwrl_3GFK.pdb
: