Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQL--LNFYNIDD--KLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYE-FLKYYEIPVIIVATKADKI-PRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
3IEV Chain:A ((13-180))
------------------------------VAIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD---VILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVPISALKGANLDELVKTILKYL
General information:
TITO was launched using:
RESULT:
Template:
3IEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80522 for 1239 contacts (-65.0/contact) +
2D Compatibility (PS) -17585 + (NN) -6229 + (LL) 2008
1D Compatibility (HY) -12800 + (ID) 2750
Total energy: -117878.0 ( -95.14 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_3IEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEV-query.scw
PDB file :
Tito_Scwrl_3IEV.pdb
: