Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNRKDDHIKYA----LKYQSPYNSFDDIELIHSSLPKYNVNDIDLSTHFAGQSFEFPFYINAMTGGSEKGKAVNHKLAQVAQATGIVMATGSYSAALKNDE-DDSYPTT-DLYPDLKLATNIGLDK-----PLPAAESTVKAMNPIFLQVHVNVMQELLMPEGEREFHMWR-SHLKEYVDNIQCPLILKEVGFGMDLQSIKDAYDIGITTVDISGRGGTSFAYIE--------NQRGRDRSYLNTWGQTTAQSLINAQSMMDKMDILASGGIRHPLDMVKCLVLGAKAVGLSRTVLELVERYPVDDVIAILNSWKE---DLRMIMCALNCKKITDLRQVNYILYGQLKEANAK |
| 3B04 Chain:A ((6-349)) | --NRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVL----KSAIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGKLKEWAEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193137 for 2869 contacts (-67.3/contact) +
2D Compatibility (PS) -34391 + (NN) -9158 + (LL) 836
1D Compatibility (HY) -19600 + (ID) 4550
Total energy: -260000.0 ( -90.62 by residue)
QMean score : 0.504
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