Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVE-------VDTTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS
4P86 Chain:A ((8-178))
-----ILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS--TSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQNDLVAIYENE
General information:
TITO was launched using:
RESULT:
Template:
4P86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116313 for 1245 contacts (-93.4/contact) +
2D Compatibility (PS) -17521 + (NN) -2401 + (LL) 836
1D Compatibility (HY) -19600 + (ID) 4700
Total energy: -159699.0 ( -128.27 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_4P86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P86-query.scw
PDB file :
Tito_Scwrl_4P86.pdb
: