Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNNDIPKEDMEYILDTAWLSPSSVGLEGWRFLVL-DRQTIAKFRDKLKEVAWGAQYQLDTASHFVLLLAE-KGAYYNADSMINSLVRRGLGDPAALESRIPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDKKEAISCMVSFGYRLRE--PKHSRARKERQEVITWVE
1NOX Chain:A ((17-204))
----------------RRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPAT----KRALREAAFG-QAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQG--------ERREAQKQAIQRAFAAMGQE-ARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAIL---GL--PSRAAIPALVALGYPAEEGYPSH---RLPLERVVLWR-
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92302 for 1297 contacts (-71.2/contact) +
2D Compatibility (PS) -19386 + (NN) -1943 + (LL) 3072
1D Compatibility (HY) -13200 + (ID) 3050
Total energy: -126809.0 ( -97.77 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: