Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTTKVFSVLSLSVAAFMMTACQSNHSTKKADMSPDKVEQKTKFKNISLSSNKLLAKENTMSVLWYQNSAEAKALYLQGYNVAKMKLDDWLQKPSEKPYSIILDLDETVLDNSPYQAKNIKDGSSFTPESWDKWVQKKSAKAVAGAKAFLKYANEKGIKIYYVSDRTDA-QVDATKENLEKEGIPVQGKDHLLFLKKGMKSKESRRQAVQKDTNLIMLF-GDNLVDFADFSKSS-STDREQLLTKLQSEFGSKFIVFPNPMYGSWESAIYQGKH-LDVQKQLKERQKMLHSYD |
3OCX Chain:A ((12-252)) | --------------------------------------------------ANMQLQQQAVLGLNWMQDSGEYKALAYQAYNAAKVAFDH-AKVAKGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGV-EESAFYLKKDKSAKAARFAEIEKQGYEIVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFIMLPNANYGGWEGGLAEGYFKKDTQGQIKARLDAVQAWD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16650 for 1790 contacts (-9.3/contact) +
2D Compatibility (PS) -25711 + (NN) -12786 + (LL) 3828
1D Compatibility (HY) -12400 + (ID) 3900
Total energy: -67619.0 ( -37.78 by residue)
QMean score : 0.422
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