Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKEYENNPYHLAQLVDLINYCQNIEAKLD---IK---MAEQDDIFQI---ENYYQNRKGQFWIALENEKVVGSIALLRIDD----KTAVLKKFFTYPKYRGNPVRLGRKLFERFMLFARASKFTRIVLDTPEKEKRSHFFYENQGFKQITRDELDVDY-IFPDRDSRIYVKLLD
1GHE Chain:A ((4-173))
--AQLRRVTAESFAHYRHGLAQLLFETVHGGASVGFMADLDMQQAYAWCDGLKADIAAGSLLLWVVAEDDNVLASAQLSLCQKPNGLNRAEVQKLMVLPSARGR--GLGRQLMDEVEQVAVKHKRGLLHLDTE-AGSVAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTL-
General information:
TITO was launched using:
RESULT:
Template:
1GHE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51987 for 1141 contacts (-45.6/contact) +
2D Compatibility (PS) -15891 + (NN) -790 + (LL) 392
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -73226.0 ( -64.18 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1GHE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GHE-query.scw
PDB file :
Tito_Scwrl_1GHE.pdb
: