Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
4QG3 Chain:A ((2-228))
--KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMVPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
4QG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107964 for 1797 contacts (-60.1/contact) +
2D Compatibility (PS) -24822 + (NN) -15688 + (LL) 660
1D Compatibility (HY) -17600 + (ID) 6100
Total energy: -171514.0 ( -95.44 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4QG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QG3-query.scw
PDB file :
Tito_Scwrl_4QG3.pdb
: