Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFLKALPRRAEVQYDCLDRTLETQENVNLNIRVNVKEVATWGVNTCIISLKGLD----NADDRFVLPEVNTA----LALFPLSIAADCLLMLPCISVVMSISSVMKSVTVE
4AMV Chain:A ((534-588))
-----------------------------------IEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHV----------------------
General information:
TITO was launched using:
RESULT:
Template:
4AMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17626 for 206 contacts (-85.6/contact) +
2D Compatibility (PS) -5035 + (NN) -1801 + (LL) 5384
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -21878.0 ( -106.20 by residue)
QMean score : 0.142
(partial model without unconserved sides chains):
PDB file :
Tito_4AMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AMV-query.scw
PDB file :
Tito_Scwrl_4AMV.pdb
: