Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQSQNDFTFPSDTYLLLYFWSMSCPNCHQ---LTDKVLQDIKDMNVKVIGVHVP-YIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
2H30 Chain:A ((56-160))
----------------------------DKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSI------------
General information:
TITO was launched using:
RESULT:
Template:
2H30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76520 for 682 contacts (-112.2/contact) +
2D Compatibility (PS) -10841 + (NN) -4815 + (LL) 2320
1D Compatibility (HY) -1600 + (ID) 1400
Total energy: -92856.0 ( -136.15 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2H30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H30-query.scw
PDB file :
Tito_Scwrl_2H30.pdb
: