Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEYPDHDLIEELVNHYCFEHEI
2KD2 Chain:A ((108-128))
-------------DLRVVLEKDTMDVWCNGQKME-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4917 for 82 contacts (-60.0/contact) +
2D Compatibility (PS) -2346 + (NN) -1426 + (LL) 2776
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -8563.0 ( -104.43 by residue)
QMean score : 0.175
(partial model without unconserved sides chains):
PDB file :
Tito_2KD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KD2-query.scw
PDB file :
Tito_Scwrl_2KD2.pdb
: