Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSVKIIDPEGNDVTPEKLKREQRNNKLH
1NKZ Chain:B ((1-21))-------------------ATLTAEQSEE---LHKYVIDGTRV----------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1NKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 10 -227 -22.70 -10.81
target 2D structure prediction score : 0.81
Monomeric hydrophicity matching model chain B : 0.69

3D Compatibility (PKB) : -22.70
2D Compatibility (Sec. Struct. Predict.) : 0.81
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.609

(partial model without unconserved sides chains):
PDB file : Tito_1NKZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NKZ-query.scw
PDB file : Tito_Scwrl_1NKZ.pdb: