Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIIMKEAIIATHNPGKVKEFKEILEPRGYDVKSLAEIGFTEEIEETGHTFEENAIMKAEAVAKAVNKMVIADDSGLSIDNLGGRPGVYSARYAGEQKDDQANIEKVLSELKGIEKEQRTARFRCALAVSIPGEETKTVEGHVEGYIAEEPRGEYGFGYDPIFIVKDKDKTMAELTSDEKNKISHRADALKKLSKLLEA
2DVP Chain:A ((4-182))-------FFITSNPGKVREVANFLGTFGIEIVQLKH----EYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVY-----RTIGLEGILKLMEG--AEDRRAYFKSVIGFYIDGKAYK-FSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKV


General information:
TITO was launched using:
RESULT:

Template: 2DVP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 931 -53174 -57.11 -297.06
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -57.11
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.443

(partial model without unconserved sides chains):
PDB file : Tito_2DVP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2DVP-query.scw
PDB file : Tito_Scwrl_2DVP.pdb: