Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MIVYAVNMGIVFI-----WSWFAKMCGGRDDSLATGYRPNKLLIWIPLASLVLVS----GLRYRVGTDFQTYTLLYELAGDYQNVWQIFGFGTAKTATDPGFTA-LLWLMNFITEDPQIMYFTVAVVTYSFIMKTLADYGRPFELSVFLFLGTFHYYASFN-G---IRQYMVAAVLFWAIRYIISGNWKRYFLIVLVSSLFHSSALIMIPVYFIVRRKAWSPAIFGLSALFLGMTFLYQKFISVFVVVLENSSYSHYEKWLMTNTNGMN--VIKIAVLVLPLFLAFCYKE-RLRS-LWPQIDIVVNLCLLGFLFGLLATKDVIFARFNIYFGLYQMILVPYFVRIFDEKSN-ALIYIAIV--VCYFLYS----YLLMPVDSSVL--------------P-YRTIFSR------------
3WJ9 Chain:A ((3-412))QKSQFAYRSSKSIGLVNASENYASPPKFEAISEPARNACYSPNGKLFAYATATQVVINDTESGAKLTQLPAANTYELGFSPLGKYLSTWERPG----KEADGTPKQNMKVWN----TETGQLVFSFVQRNQTGWNLQYTCDES----LAARLVTNEVHFYETGNMSKGPIAKLRVEGISDFAL-----SPGQNHAVAVFIPEKKGAPASVRTYSIPNFNSPLSQKTFFKADKVQFKWNALGT---SLLVLTQDKSNKNYYGETTGQFDLDREGPIHDVCWNADSKEFGIVYGYMPAKTAIFDNRANVVSIIPPA------PRNTLIFSPNSRYILLAGFGNLQGSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRVDNSIKIWHITGAPMFYEEFNELYQAFWRPRPLN


General information:
TITO was launched using:
RESULT:

Template: 3WJ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1769 -111077 -62.79 -325.74
target 2D structure prediction score : 0.25
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -62.79
2D Compatibility (Sec. Struct. Predict.) : 0.25
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.129

(partial model without unconserved sides chains):
PDB file : Tito_3WJ9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3WJ9-query.scw
PDB file : Tito_Scwrl_3WJ9.pdb: