Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFIEQMFPFINESVRVHQLPEGGVLEIDYLRDNVSISDFEYLDLNKTAYELCMRMDGQKTAEQILAEQCAVYDESPEDHKDWYYDMLNMLQNKQVIQLGNRASRHTITTSGSNEFPMPLHATFELTHRCNLKCAHCYLESSPEALGTVSIEQFKKTADMLFD--NGVLTCEITGGE-IFVHPNANEILDYVCKK--FKKVAVL----TNGTLMRKESLELLKTYKQKIIVGISLDSVNSEVHDSFRGR---KGSFAQTCKTIKLLSDHGIFVRVAMSVFEKNMWEIHDMAQKVRDLGAKAFSY-NWVDDFGRGRDIVHPTKDAEQHRKFME------YEQHV------IDEFKDLIPIIPYERKRAANCGAGWK---SIVISPFGEVRPCALFP-KEFSLGNIFHDSYESIFNSPLVHKLWQAQAPRFSEHCMKDKCPFSGYC-GGCYLKGLNSNKYHRKNICSWAKNEQLEDVVQLI
4K39 Chain:A ((15-330))--------------------------------------------------------------------------------------------------------------------------------CNLKCTYCFYH---KSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLS--ENKFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILL--GKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLS---FKVHEECKKCKWFRLCKGGC-------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4K39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1262 20130 15.95 72.41
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 15.95
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.360

(partial model without unconserved sides chains):
PDB file : Tito_4K39.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4K39-query.scw
PDB file : Tito_Scwrl_4K39.pdb: