Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2HQ6 Chain:A ((19-178))
--------SEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEA---------------YYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLR-LSEVDIDDDERPHNPHKIKSCEV-
General information:
TITO was launched using:
RESULT:
Template:
2HQ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70285 for 1262 contacts (-55.7/contact) +
2D Compatibility (PS) -16787 + (NN) -9893 + (LL) 24
1D Compatibility (HY) -13200 + (ID) 3550
Total energy: -113691.0 ( -90.09 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_2HQ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HQ6-query.scw
PDB file :
Tito_Scwrl_2HQ6.pdb
: