Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETL----AEAILLTA-------DVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR
2BDQ Chain:A ((57-145))
--------------VAVMIRPRGGNFVYND-LELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPK-SDQKKSIDQLVAL-------
General information:
TITO was launched using:
RESULT:
Template:
2BDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9402 for 439 contacts (-21.4/contact) +
2D Compatibility (PS) -7561 + (NN) 1052 + (LL) 1312
1D Compatibility (HY) 1600 + (ID) 150
Total energy: -13149.0 ( -29.95 by residue)
QMean score : 0.018
(partial model without unconserved sides chains):
PDB file :
Tito_2BDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BDQ-query.scw
PDB file :
Tito_Scwrl_2BDQ.pdb
: