Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQDSIFNLLTEEQLRGRNTLKWNYF--GPDVVPLWLAEMDFPTAPAVLDGVRACVDNEEFGYPPLGEDSLPRATADWCRQRYGWCPRPDWVRVVPDVLKGMEVVVEFLTRPESPVALPVPAYMPFFDVLHVTGRQRVEVPMVQQDSGRYLLDLDALQAAFVRGAGSV-IICNPNNPLGTAFTEAELRAIVDIAARHGARVIADEIWAPV-VYGSRHVAAASVSEAAAEVVVTLVSASKGWNLPGLMCAQVILSNRRDAHDWDRINMLHRMG-ASTVGIRANIAAYHHGESWLDELLPYLRANRDHLARALPELAPGVEVNAPDGTYLSWVDFRALALPSEPAEYLL-SKAKVALSPGIPFGAAVGSGFARLNFATTRAILDRAIEAIAAALRDIID |
3B1E Chain:A ((6-390)) | ---SKYNFQTAPNRLSHHTYKWKETETDPQLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYT-YASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSL-KEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSE-GELHARLNIAAPKSLVEEICKRIVCCL----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3B1E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -239520 for 3238 contacts (-74.0/contact) +
2D Compatibility (PS) -41119 + (NN) -19181 + (LL) 852
1D Compatibility (HY) -24000 + (ID) 5000
Total energy: -327968.0 ( -101.29 by residue)
QMean score : 0.482
|
|
|