Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNANFSILVDFAAGGLVLASVLIVWRRDLRAIVRLLAWQGAALAAIPLLRGIRDNDRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPAAFAVVLIALFVMTTRLHAVSQAAGFLMLDNGIAATAFLLTAGVPLIVELGASLDVLFAVIVIGVLTGRLRRIFGDADLDKLRELRD |
2JP3 Chain:A ((17-40)) | ------------------------------------------------------------------------------------------------------------------------------LQLGGLIFGGLLCIAGIALALSGK---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6673 for 90 contacts (-74.1/contact) +
2D Compatibility (PS) -2523 + (NN) -1414 + (LL) 18052
1D Compatibility (HY) -1200 + (ID) 0
Total energy: 6242.0 ( 69.36 by residue)
QMean score : -0.174
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