Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQK---AILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPT--TKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLPRRTAESALRASLSPELGT
4U66 Chain:A ((5-140))
----QKLSIAVFALGCFWGPDAQFGSIKGVVSTRVGYAGGTTNNPSYYNLGDHSESIEIQYDANVITYGELLNIFWNLHNPVYETTNRQ-------YMSRIFYLDDGQKSEALEMKRQIEAAN--GEKIYTEIVPLENFYLAEGYHQKY--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4U66.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72178 for 964 contacts (-74.9/contact) +
2D Compatibility (PS) -14472 + (NN) -12853 + (LL) 2028
1D Compatibility (HY) -11600 + (ID) 3050
Total energy: -112125.0 ( -116.31 by residue)
QMean score : 0.737
(partial model without unconserved sides chains):
PDB file :
Tito_4U66.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U66-query.scw
PDB file :
Tito_Scwrl_4U66.pdb
: